- Class: 3
- Architecture: 3.40:3-Layer(aba) Sandwich
- Topology: 3.40.50:Rossmann fold
- Homology: 3.40.50.1470:Peptidyl-tRNA hydrolase
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
---|---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
1ryb | [A] | [A] | [A] | 1.7 | ||||
1rym | [A] | [A] | [A] | 1.8 | ||||
1ryn | [A] | [A] | [A] | 1.75 | ||||
2jrc | [A] | [A] | [A] | NOTAPPLICABLE. | ||||
2lgj | [A] | [A] | [A] | NOTAPPLICABLE. | ||||
2mjl | [A] | [A] | [A] | NOTAPPLICABLE. | ||||
2naf | [A] | [A] | [A] | NOTAPPLICABLE. | ||||
2pth | [A] | [A] | [A] | 1.2 | ||||
2z2i | [A] | [A] | [A] | 1.98 | ||||
2z2j | [A] | [A] | [A] | 2.35 | ||||
2z2k | [A] | [A] | [A] | 2.5 | CL:CHLORIDE ION | |||
3kjz | [A] | [A] | [A] | 2.4 | ||||
3kk0 | [A] | [A] | [A] | 2.65 | BME:BETA-MERCAPTOETHANOL EDO:1,2-ETHANEDIOL IPA:ISOPROPYL ALCOHOL PEG:DI(HYDROXYETHYL)ETHER | |||
3nea | [A] | [A] | [A] | 2.25 | CL:CHLORIDE ION EDO:1,2-ETHANEDIOL | |||
3ofv | [A3] | [A3] | [A3] | 3.2 | ||||
3p2j | [A] | [A] | [A] | 2.22 | ||||
3tck | [A] | [A] | [A] | 2.3 | ||||
3tcn | [A] | [A] | [A] | 2.3 | ||||
3td2 | [A] | [A] | [A] | 2.5 | ||||
3td6 | [A] | [A] | [A] | 3.2 | ||||
3v2i | [A] | [A] | [A] | 1.65 | CIT:CITRIC ACID UNL:UNKNOWN LIGAND | |||
3vjr | [A2](a2) | [A2](a2) | [A2](a2) | 2.4 | ||||
4dhw | [A] | [A] | [A] | 2.43 | 0L1:HEXANEDIOIC ACID | |||
4djj | [A] | [A] | [A] | 2.94 | PML:PIMELIC ACID | |||
4erx | [A] | [A] | [A] | 2.5 | PEG:DI(HYDROXYETHYL)ETHER | |||
4fno | [A] | [A] | [A] | 2.25 | GOL:GLYCEROL PEG:DI(HYDROXYETHYL)ETHER | |||
4fop | [A] | [A] | [A] | 1.86 | ACT:ACETATE ION GOL:GLYCEROL PEG:DI(HYDROXYETHYL)ETHER | |||
4fot | [A] | [A] | [A] | 2.2 | EDO:1,2-ETHANEDIOL GOL:GLYCEROL PEG:DI(HYDROXYETHYL)ETHER | |||
4fyj | [A] | [A] | [A] | 1.77 | ||||
4hoy | [A] | [A] | [A] | 1.78 | ACT:ACETATE ION EDO:1,2-ETHANEDIOL GOL:GLYCEROL PEG:DI(HYDROXYETHYL)ETHER | |||
4iko | [A] | [A] | [A] | 1.9 | ACT:ACETATE ION EDO:1,2-ETHANEDIOL GOL:GLYCEROL PEG:DI(HYDROXYETHYL)ETHER | |||
4jc4 | [A] | [A] | [A] | 2.25 | GOL:GLYCEROL | |||
4jwk | [A] | [A] | [A] | 1.87 | CTN:4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE | |||
4jx9 | [A] | [A] | [A] | 1.4 | URI:URIDINE | |||
4jy7 | [A] | [A] | [A] | 1.9 | ACT:ACETATE ION EDO:1,2-ETHANEDIOL GOL:GLYCEROL PEG:DI(HYDROXYETHYL)ETHER | |||
4lwq | [A] | [A] | [A] | 1.38 | GOL:GLYCEROL | |||
4olj | [A] | [A] | [A] | 1.49 | GOL:GLYCEROL TLA:L(+)-TARTARIC ACID | |||
4p7b | [A] | [A] | [A] | 1.6 | TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | |||
4qaj | [A] | [A] | [A] | 1.5 | ||||
4qbk | [A] | [A] | [A] | 1.77 | 3NZ:3___sq___-DEOXY-3___sq___-[(O-METHYL-L-TYROSYL)AMINO]ADENOSINE GOL:GLYCEROL | |||
4qd3 | [A] | [A] | [A] | 1.89 | 5AE:4-AMINO-1-(BETA-D-RIBOFURANOSYL)-1,3,5-TRIAZIN-2(1H)-ONE GOL:GLYCEROL | |||
4qt4 | [A] | [A] | [A] | 2.19 | ||||
4yly | [A] | [A] | [A] | 2.25 | GOL:GLYCEROL | |||
4z86 | [A2] | [A2] | [A2] | 1.63 | 2CO:S-HYDROPEROXYCYSTEINE | |||
4zxp | [A] | [A] | [A] | 1.63 | CSO:S-HYDROXYCYSTEINE FLC:CITRATE ANION | |||
5b6j | [A] | [A] | [A] | 2.43 | CSO:S-HYDROXYCYSTEINE | |||
5ekt | [A] | [A] | [A] | 1.63 | 2CO:S-HYDROPEROXYCYSTEINE FLC:CITRATE ANION | |||
5gvz | [A] | [A] | [A] | 1.75 | 2CO:S-HYDROPEROXYCYSTEINE ACT:ACETATE ION SO4:SULFATE ION | |||
5ike | [A2] | [A2] | [A2] | 2.09 | 2CO:S-HYDROPEROXYCYSTEINE | |||
5imb | [A] | [A] | [A] | 2.4 | CSO:S-HYDROXYCYSTEINE | |||
5ivp | [A] | [A] | [A] | 2.01 | 2CO:S-HYDROPEROXYCYSTEINE FLC:CITRATE ANION | |||
5y98 | [A] | [A] | [A] | 1.36 | GOL:GLYCEROL | |||
5y9a | [A] | [A] | [A] | 1.1 | AR3:CYTARABINE PO4:PHOSPHATE ION | |||
5yl8 | [A2] | [A2] | [A2] | 1.79 | NA:SODIUM ION | |||
5yla | [A2] | [A2] | [A2] | 1.68 | ||||
5yn4 | [A2] | [A2] | [A2] | 1.47 | ||||
5zk0 | [A] | [A] | [A] | 2.55 | 2CO:S-HYDROPEROXYCYSTEINE NA:SODIUM ION | |||
5zx8 | [A] | [A] | [A] | 1 | FLC:CITRATE ANION MPD:(4S)-2-METHYL-2,4-PENTANEDIOL | |||
5zzv | [A] | [A] | [A] | 1.57 | EDO:1,2-ETHANEDIOL | |||
6a31 | [A] | [A] | [A] | 2.19 | NA:SODIUM ION | |||
6ivv | [A] | [A] | [A] | 1.26 | CL:CHLORIDE ION EDO:1,2-ETHANEDIOL PEG:DI(HYDROXYETHYL)ETHER | |||
6ix6 | [A] | [A] | [A] | 1.43 | POL:N-PROPANOL | |||
6iye | [A] | [A] | [A] | 1.55 | ||||
6j93 | [A] | [A] | [A] | 0.95 | EDO:1,2-ETHANEDIOL | |||
6jgu | [A] | [A] | [A] | 1.02 | ||||
6jj1 | [A] | [A] | [A] | 0.97 | CL:CHLORIDE ION EDO:1,2-ETHANEDIOL | |||
6jjq | [A] | [A] | [A] | 0.99 | CL:CHLORIDE ION NA:SODIUM ION PEG:DI(HYDROXYETHYL)ETHER | |||
6jkx | [A] | [A] | [A] | 1.08 | CL:CHLORIDE ION MOH:METHANOL NA:SODIUM ION | |||
6jqt | [A] | [A] | [A] | 1.8 |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA